J3_9PA7_021

3D structure

PDB id

9PA7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human 80S consensus ribosome with EBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.67 Å

Loop

Sequence

GGGGGCG*CUCGCUUCUGGCGCCAAG*CGAC

Length

29 nucleotides

Bulged bases

9PA7|1|L5|C|4114, 9PA7|1|L5|G|4115, 9PA7|1|L5|C|4116, 9PA7|1|L5|U|4117, 9PA7|1|L5|U|4118, 9PA7|1|L5|C|4119, 9PA7|1|L5|U|4120, 9PA7|1|L5|G|4121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9PA7|1|L5|G|4091
9PA7|1|L5|G|4092
9PA7|1|L5|G|4093
9PA7|1|L5|G|4094
9PA7|1|L5|G|4095
9PA7|1|L5|C|4096
9PA7|1|L5|G|4097
*
9PA7|1|L5|C|4112
9PA7|1|L5|U|4113
9PA7|1|L5|C|4114
9PA7|1|L5|G|4115
9PA7|1|L5|C|4116
9PA7|1|L5|U|4117
9PA7|1|L5|U|4118
9PA7|1|L5|C|4119
9PA7|1|L5|U|4120
9PA7|1|L5|G|4121
9PA7|1|L5|G|4122
9PA7|1|L5|C|4123
9PA7|1|L5|G|4124
9PA7|1|L5|C|4125
9PA7|1|L5|C|4126
9PA7|1|L5|A|4127
9PA7|1|L5|A|4128
9PA7|1|L5|G|4129
*
9PA7|1|L5|C|4155
9PA7|1|L5|G|4156
9PA7|1|L5|A|4157
9PA7|1|L5|C|4158

Current chains

Chain L5

28S rRNA

Nearby chains

Chain CD

SERPINE1 mRNA-binding protein 1

Chain LA

60S ribosomal protein L8

Chain LG

60S ribosomal protein L7a

Chain LX

60S ribosomal protein L23a

Chain LZ

60S ribosomal protein L27

Chain Lc

60S ribosomal protein L30

Chain Lg

60S ribosomal protein L34

Chain Lp

60S ribosomal protein L37a