J3_9PA7_038

3D structure

PDB id

9PA7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human 80S consensus ribosome with EBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.67 Å

Loop

Sequence

(OMC)CGGAC*GGGUG*UUAGAUG

Length

18 nucleotides

Bulged bases

9PA7|1|S2|G|1274, 9PA7|1|S2|G|1507, 9PA7|1|S2|U|1509

QA status

Modified nucleotides: OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9PA7|1|S2|OMC|1272
9PA7|1|S2|C|1273
9PA7|1|S2|G|1274
9PA7|1|S2|G|1275
9PA7|1|S2|A|1276
9PA7|1|S2|C|1277
*
9PA7|1|S2|G|1320
9PA7|1|S2|G|1321
9PA7|1|S2|G|1322
9PA7|1|S2|U|1323
9PA7|1|S2|G|1324
*
9PA7|1|S2|U|1504
9PA7|1|S2|U|1505
9PA7|1|S2|A|1506
9PA7|1|S2|G|1507
9PA7|1|S2|A|1508
9PA7|1|S2|U|1509
9PA7|1|S2|G|1510

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SK

40S ribosomal protein S10

Chain Sd

40S ribosomal protein S29

Chain Sf

Ubiquitin-40S ribosomal protein S27a