J3_9PBE_002

3D structure

PDB id

9PBE (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human 80S ribosome (composite map)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.19 Å

Loop

Sequence

CAAG*CCCAGCCCGUGGAC*GGUAG

Length

23 nucleotides

Bulged bases

9PBE|1|L5|C|216, 9PBE|1|L5|C|217, 9PBE|1|L5|A|218, 9PBE|1|L5|G|219, 9PBE|1|L5|U|224

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9PBE|1|L5|C|196
9PBE|1|L5|A|197
9PBE|1|L5|A|198
9PBE|1|L5|G|199
*
9PBE|1|L5|C|215
9PBE|1|L5|C|216
9PBE|1|L5|C|217
9PBE|1|L5|A|218
9PBE|1|L5|G|219
9PBE|1|L5|C|220
9PBE|1|L5|C|221
9PBE|1|L5|C|222
9PBE|1|L5|G|223
9PBE|1|L5|U|224
9PBE|1|L5|G|225
9PBE|1|L5|G|226
9PBE|1|L5|A|227
9PBE|1|L5|C|228
*
9PBE|1|L5|G|240
9PBE|1|L5|G|241
9PBE|1|L5|U|242
9PBE|1|L5|A|243
9PBE|1|L5|G|244

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LC

60S ribosomal protein L4

Chain LY

60S ribosomal protein L26