J3_9PBE_008
3D structure
- PDB id
- 9PBE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ human 80S ribosome (composite map)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.19 Å
Loop
- Sequence
- UGA(A2M)C(PSU)A*UAG*CGAA
- Length
- 14 nucleotides
- Bulged bases
- 9PBE|1|L5|A2M|1534, 9PBE|1|L5|G|1641, 9PBE|1|L5|A|1642
- QA status
- Modified nucleotides: A2M, PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9PBE|1|L5|U|1531
9PBE|1|L5|G|1532
9PBE|1|L5|A|1533
9PBE|1|L5|A2M|1534
9PBE|1|L5|C|1535
9PBE|1|L5|PSU|1536
9PBE|1|L5|A|1537
*
9PBE|1|L5|U|1622
9PBE|1|L5|A|1623
9PBE|1|L5|G|1624
*
9PBE|1|L5|C|1640
9PBE|1|L5|G|1641
9PBE|1|L5|A|1642
9PBE|1|L5|A|1643
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain LA
- 60S ribosomal protein L8
- Chain LN
- 60S ribosomal protein L15
- Chain Lj
- 60S ribosomal protein L37
- Chain Ll
- 60S ribosomal protein L39
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