J3_9PBE_021

3D structure

PDB id

9PBE (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human 80S ribosome (composite map)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.19 Å

Loop

Sequence

GGGGGCG*CUCGCUUCUGGCGCCAAG*CGAC

Length

29 nucleotides

Bulged bases

9PBE|1|L5|C|4114, 9PBE|1|L5|G|4115, 9PBE|1|L5|C|4116, 9PBE|1|L5|U|4117, 9PBE|1|L5|U|4118, 9PBE|1|L5|C|4119, 9PBE|1|L5|U|4120, 9PBE|1|L5|G|4121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9PBE|1|L5|G|4091
9PBE|1|L5|G|4092
9PBE|1|L5|G|4093
9PBE|1|L5|G|4094
9PBE|1|L5|G|4095
9PBE|1|L5|C|4096
9PBE|1|L5|G|4097
*
9PBE|1|L5|C|4112
9PBE|1|L5|U|4113
9PBE|1|L5|C|4114
9PBE|1|L5|G|4115
9PBE|1|L5|C|4116
9PBE|1|L5|U|4117
9PBE|1|L5|U|4118
9PBE|1|L5|C|4119
9PBE|1|L5|U|4120
9PBE|1|L5|G|4121
9PBE|1|L5|G|4122
9PBE|1|L5|C|4123
9PBE|1|L5|G|4124
9PBE|1|L5|C|4125
9PBE|1|L5|C|4126
9PBE|1|L5|A|4127
9PBE|1|L5|A|4128
9PBE|1|L5|G|4129
*
9PBE|1|L5|C|4155
9PBE|1|L5|G|4156
9PBE|1|L5|A|4157
9PBE|1|L5|C|4158

Current chains

Chain L5

28S rRNA

Nearby chains

Chain CD

Isoform 2 of SERPINE1 mRNA-binding protein 1

Chain LA

60S ribosomal protein L8

Chain LG

60S ribosomal protein L7a

Chain LX

60S ribosomal protein L23a

Chain LZ

60S ribosomal protein L27

Chain Lc

60S ribosomal protein L30

Chain Lg

60S ribosomal protein L34

Chain Lp

60S ribosomal protein L37a