J3_9PBE_025

3D structure

PDB id

9PBE (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human 80S ribosome (composite map)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.19 Å

Loop

Sequence

GUUG*CCUUC*GCACCGCACGUUC

Length

22 nucleotides

Bulged bases

9PBE|1|L5|U|4882, 9PBE|1|L5|A|4938, 9PBE|1|L5|C|4940, 9PBE|1|L5|A|4943, 9PBE|1|L5|C|4944

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9PBE|1|L5|G|4751
9PBE|1|L5|U|4752
9PBE|1|L5|U|4753
9PBE|1|L5|G|4754
*
9PBE|1|L5|C|4879
9PBE|1|L5|C|4880
9PBE|1|L5|U|4881
9PBE|1|L5|U|4882
9PBE|1|L5|C|4883
*
9PBE|1|L5|G|4936
9PBE|1|L5|C|4937
9PBE|1|L5|A|4938
9PBE|1|L5|C|4939
9PBE|1|L5|C|4940
9PBE|1|L5|G|4941
9PBE|1|L5|C|4942
9PBE|1|L5|A|4943
9PBE|1|L5|C|4944
9PBE|1|L5|G|4945
9PBE|1|L5|U|4946
9PBE|1|L5|U|4947
9PBE|1|L5|C|4948

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LE

Large ribosomal subunit protein eL6

Chain LM

60S ribosomal protein L14

Chain LO

60S ribosomal protein L13a

Chain Lf

60S ribosomal protein L35a