J3_9PBE_030
3D structure
- PDB id
- 9PBE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ human 80S ribosome (composite map)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.19 Å
Loop
- Sequence
- U(OMG)G*UAAGA*UA
- Length
- 10 nucleotides
- Bulged bases
- 9PBE|1|S2|G|921
- QA status
- Modified nucleotides: OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9PBE|1|S2|U|682
9PBE|1|S2|OMG|683
9PBE|1|S2|G|684
*
9PBE|1|S2|U|918
9PBE|1|S2|A|919
9PBE|1|S2|A|920
9PBE|1|S2|G|921
9PBE|1|S2|A|922
*
9PBE|1|S2|U|1022
9PBE|1|S2|A|1023
Current chains
- Chain S2
- 18S rRNA
Nearby chains
- Chain SH
- Small ribosomal subunit protein eS7
- Chain SL
- 40S ribosomal protein S11
- Chain SN
- 40S ribosomal protein S13
- Chain SW
- 40S ribosomal protein S15a
- Chain SX
- 40S ribosomal protein S23
- Chain Sb
- Small ribosomal subunit protein eS27
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