J3_9PBE_038

3D structure

PDB id

9PBE (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human 80S ribosome (composite map)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.19 Å

Loop

Sequence

(OMC)CGGAC*GGGUG*UUAGAUG

Length

18 nucleotides

Bulged bases

9PBE|1|S2|G|1274, 9PBE|1|S2|G|1507, 9PBE|1|S2|U|1509

QA status

Modified nucleotides: OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9PBE|1|S2|OMC|1272
9PBE|1|S2|C|1273
9PBE|1|S2|G|1274
9PBE|1|S2|G|1275
9PBE|1|S2|A|1276
9PBE|1|S2|C|1277
*
9PBE|1|S2|G|1320
9PBE|1|S2|G|1321
9PBE|1|S2|G|1322
9PBE|1|S2|U|1323
9PBE|1|S2|G|1324
*
9PBE|1|S2|U|1504
9PBE|1|S2|U|1505
9PBE|1|S2|A|1506
9PBE|1|S2|G|1507
9PBE|1|S2|A|1508
9PBE|1|S2|U|1509
9PBE|1|S2|G|1510

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SK

40S ribosomal protein S10

Chain Sd

40S ribosomal protein S29

Chain Sf

Ubiquitin-40S ribosomal protein S27a