J3_9PGF_015

3D structure

PDB id

9PGF (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ structure of the human mitoribosome in the P state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.93 Å

Loop

Sequence

UGUAAUC*GAUCAACCUCAC*GCAA

Length

23 nucleotides

Bulged bases

9PGF|1|AA|U|1229, 9PGF|1|AA|C|1230, 9PGF|1|AA|A|1231, 9PGF|1|AA|A|1232

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9PGF|1|AA|U|1210
9PGF|1|AA|G|1211
9PGF|1|AA|U|1212
9PGF|1|AA|A|1213
9PGF|1|AA|A|1214
9PGF|1|AA|U|1215
9PGF|1|AA|C|1216
*
9PGF|1|AA|G|1227
9PGF|1|AA|A|1228
9PGF|1|AA|U|1229
9PGF|1|AA|C|1230
9PGF|1|AA|A|1231
9PGF|1|AA|A|1232
9PGF|1|AA|C|1233
9PGF|1|AA|C|1234
9PGF|1|AA|U|1235
9PGF|1|AA|C|1236
9PGF|1|AA|A|1237
9PGF|1|AA|C|1238
*
9PGF|1|AA|G|1351
9PGF|1|AA|C|1352
9PGF|1|AA|A|1353
9PGF|1|AA|A|1354

Current chains

Chain AA

12S mitochondrial rRNA

Nearby chains

Chain 8

39S ribosomal protein L40, mitochondrial

Chain AH

28S ribosomal protein S10, mitochondrial

Chain AK

28S ribosomal protein S14, mitochondrial