J3_9PGI_015

3D structure

PDB id

9PGI (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ structure of the human mitoribosome in the A-P-E state with TACO1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.02 Å

Loop

Sequence

UGUAAUC*GAUCAACCUCAC*GCAA

Length

23 nucleotides

Bulged bases

9PGI|1|AA|U|1229, 9PGI|1|AA|C|1230, 9PGI|1|AA|A|1231, 9PGI|1|AA|A|1232

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9PGI|1|AA|U|1210
9PGI|1|AA|G|1211
9PGI|1|AA|U|1212
9PGI|1|AA|A|1213
9PGI|1|AA|A|1214
9PGI|1|AA|U|1215
9PGI|1|AA|C|1216
*
9PGI|1|AA|G|1227
9PGI|1|AA|A|1228
9PGI|1|AA|U|1229
9PGI|1|AA|C|1230
9PGI|1|AA|A|1231
9PGI|1|AA|A|1232
9PGI|1|AA|C|1233
9PGI|1|AA|C|1234
9PGI|1|AA|U|1235
9PGI|1|AA|C|1236
9PGI|1|AA|A|1237
9PGI|1|AA|C|1238
*
9PGI|1|AA|G|1351
9PGI|1|AA|C|1352
9PGI|1|AA|A|1353
9PGI|1|AA|A|1354

Current chains

Chain AA

12S mitochondrial rRNA

Nearby chains

Chain 8

39S ribosomal protein L40, mitochondrial

Chain AH

28S ribosomal protein S10, mitochondrial

Chain AK

28S ribosomal protein S14, mitochondrial

Chain Aw

A/A-tRNA