J3_9PGL_017

3D structure

PDB id

9PGL (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ structure of the human mitoribosome in the A-P state with TACO1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CAUUU*AAACUAC*GGUG

Length

16 nucleotides

Bulged bases

9PGL|1|AA|U|1369, 9PGL|1|AA|C|1385, 9PGL|1|AA|U|1386

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9PGL|1|AA|C|1366
9PGL|1|AA|A|1367
9PGL|1|AA|U|1368
9PGL|1|AA|U|1369
9PGL|1|AA|U|1370
*
9PGL|1|AA|A|1382
9PGL|1|AA|A|1383
9PGL|1|AA|A|1384
9PGL|1|AA|C|1385
9PGL|1|AA|U|1386
9PGL|1|AA|A|1387
9PGL|1|AA|C|1388
*
9PGL|1|AA|G|1418
9PGL|1|AA|G|1419
9PGL|1|AA|U|1420
9PGL|1|AA|G|1421

Current chains

Chain AA

12S mitochondrial rRNA

Nearby chains

Chain AF

28S ribosomal protein S7, mitochondrial

Chain AX

28S ribosomal protein S29, mitochondrial

Chain e

39S ribosomal protein L46, mitochondrial

Chain f

39S ribosomal protein L48, mitochondrial