J3_9PGM_005
3D structure
- PDB id
- 9PGM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ structure of the human mitoribosome in the P-E state from TACO1-knockout cells
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.18 Å
Loop
- Sequence
- AAAAUUUAACACCCAU*AUUAAG*CAACACCCACUACCUAAAAAAUCCCAAACAUAUAACU
- Length
- 59 nucleotides
- Bulged bases
- 9PGM|1|A|A|2154, 9PGM|1|A|U|2159, 9PGM|1|A|C|2219, 9PGM|1|A|C|2221, 9PGM|1|A|C|2224, 9PGM|1|A|C|2225, 9PGM|1|A|U|2233, 9PGM|1|A|A|2241, 9PGM|1|A|U|2242, 9PGM|1|A|A|2243, 9PGM|1|A|U|2244
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9PGM|1|A|A|2153
9PGM|1|A|A|2154
9PGM|1|A|A|2155
9PGM|1|A|A|2156
9PGM|1|A|U|2157
9PGM|1|A|U|2158
9PGM|1|A|U|2159
9PGM|1|A|A|2160
9PGM|1|A|A|2161
9PGM|1|A|C|2162
9PGM|1|A|A|2163
9PGM|1|A|C|2164
9PGM|1|A|C|2165
9PGM|1|A|C|2166
9PGM|1|A|A|2167
9PGM|1|A|U|2168
*
9PGM|1|A|A|2192
9PGM|1|A|U|2193
9PGM|1|A|U|2194
9PGM|1|A|A|2195
9PGM|1|A|A|2196
9PGM|1|A|G|2197
*
9PGM|1|A|C|2212
9PGM|1|A|A|2213
9PGM|1|A|A|2214
9PGM|1|A|C|2215
9PGM|1|A|A|2216
9PGM|1|A|C|2217
9PGM|1|A|C|2218
9PGM|1|A|C|2219
9PGM|1|A|A|2220
9PGM|1|A|C|2221
9PGM|1|A|U|2222
9PGM|1|A|A|2223
9PGM|1|A|C|2224
9PGM|1|A|C|2225
9PGM|1|A|U|2226
9PGM|1|A|A|2227
9PGM|1|A|A|2228
9PGM|1|A|A|2229
9PGM|1|A|A|2230
9PGM|1|A|A|2231
9PGM|1|A|A|2232
9PGM|1|A|U|2233
9PGM|1|A|C|2234
9PGM|1|A|C|2235
9PGM|1|A|C|2236
9PGM|1|A|A|2237
9PGM|1|A|A|2238
9PGM|1|A|A|2239
9PGM|1|A|C|2240
9PGM|1|A|A|2241
9PGM|1|A|U|2242
9PGM|1|A|A|2243
9PGM|1|A|U|2244
9PGM|1|A|A|2245
9PGM|1|A|A|2246
9PGM|1|A|C|2247
9PGM|1|A|U|2248
Current chains
- Chain A
- 16S mitochondrial rRNA
Nearby chains
- Chain 4
- 39S ribosomal protein L36, mitochondrial
- Chain E
- 39S ribosomal protein L3, mitochondrial
- Chain I
- 39S ribosomal protein L10, mitochondrial
- Chain J
- 39S ribosomal protein L11, mitochondrial
- Chain K
- Large ribosomal subunit protein uL13m
- Chain N
- 39S ribosomal protein L16, mitochondrial
- Chain R
- 39S ribosomal protein L20, mitochondrial
- Chain S
- 39S ribosomal protein L21, mitochondrial
- Chain Z
- 39S ribosomal protein L30, mitochondrial
- Chain j
- 39S ribosomal protein L52, mitochondrial
- Chain k
- Large ribosomal subunit protein mL53
- Chain l
- 39S ribosomal protein L54, mitochondrial
- Chain o
- Ribosomal protein 63, mitochondrial
- Chain r
- 39S ribosomal protein S18a, mitochondrial
Coloring options: