J3_9PGM_011

3D structure

PDB id

9PGM (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ structure of the human mitoribosome in the P-E state from TACO1-knockout cells

Experimental method

ELECTRON MICROSCOPY

Resolution

3.18 Å

Loop

Sequence

GAUU*AUUAACCU*AGC

Length

15 nucleotides

Bulged bases

9PGM|1|AA|A|688

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9PGM|1|AA|G|687
9PGM|1|AA|A|688
9PGM|1|AA|U|689
9PGM|1|AA|U|690
*
9PGM|1|AA|A|823
9PGM|1|AA|U|824
9PGM|1|AA|U|825
9PGM|1|AA|A|826
9PGM|1|AA|A|827
9PGM|1|AA|C|828
9PGM|1|AA|C|829
9PGM|1|AA|U|830
*
9PGM|1|AA|A|856
9PGM|1|AA|G|857
9PGM|1|AA|C|858

Current chains

Chain AA

12S mitochondrial rRNA

Nearby chains

Chain AJ

28S ribosomal protein S12, mitochondrial

Chain AM

28S ribosomal protein S16, mitochondrial

Chain AT

28S ribosomal protein S25, mitochondrial