J3_9PGM_013

3D structure

PDB id

9PGM (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ structure of the human mitoribosome in the P-E state from TACO1-knockout cells

Experimental method

ELECTRON MICROSCOPY

Resolution

3.18 Å

Loop

Sequence

CUC*GCAGUAA*UGAACAG

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9PGM|1|AA|C|1192
9PGM|1|AA|U|1193
9PGM|1|AA|C|1194
*
9PGM|1|AA|G|1428
9PGM|1|AA|C|1429
9PGM|1|AA|A|1430
9PGM|1|AA|G|1431
9PGM|1|AA|U|1432
9PGM|1|AA|A|1433
9PGM|1|AA|A|1434
*
9PGM|1|AA|U|1456
9PGM|1|AA|G|1457
9PGM|1|AA|A|1458
9PGM|1|AA|A|1459
9PGM|1|AA|C|1460
9PGM|1|AA|A|1461
9PGM|1|AA|G|1462

Current chains

Chain AA

12S mitochondrial rRNA

Nearby chains

Chain A2

Small ribosomal subunit protein mS37

Chain AF

28S ribosomal protein S7, mitochondrial

Chain AG

28S ribosomal protein S9, mitochondrial

Chain Ay

Transfer RNA; tRNA