J3_9PGM_015

3D structure

PDB id

9PGM (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ structure of the human mitoribosome in the P-E state from TACO1-knockout cells

Experimental method

ELECTRON MICROSCOPY

Resolution

3.18 Å

Loop

Sequence

UGUAAUC*GAUCAACCUCAC*GCAA

Length

23 nucleotides

Bulged bases

9PGM|1|AA|U|1229, 9PGM|1|AA|C|1230, 9PGM|1|AA|A|1231, 9PGM|1|AA|A|1232

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9PGM|1|AA|U|1210
9PGM|1|AA|G|1211
9PGM|1|AA|U|1212
9PGM|1|AA|A|1213
9PGM|1|AA|A|1214
9PGM|1|AA|U|1215
9PGM|1|AA|C|1216
*
9PGM|1|AA|G|1227
9PGM|1|AA|A|1228
9PGM|1|AA|U|1229
9PGM|1|AA|C|1230
9PGM|1|AA|A|1231
9PGM|1|AA|A|1232
9PGM|1|AA|C|1233
9PGM|1|AA|C|1234
9PGM|1|AA|U|1235
9PGM|1|AA|C|1236
9PGM|1|AA|A|1237
9PGM|1|AA|C|1238
*
9PGM|1|AA|G|1351
9PGM|1|AA|C|1352
9PGM|1|AA|A|1353
9PGM|1|AA|A|1354

Current chains

Chain AA

12S mitochondrial rRNA

Nearby chains

Chain AH

28S ribosomal protein S10, mitochondrial

Chain AK

28S ribosomal protein S14, mitochondrial