J3_9PII_035

3D structure

PDB id

9PII (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome bound to Sarecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GAAC*GUUGAU*AAUGAAC

Length

17 nucleotides

Bulged bases

9PII|1|a|U|2833, 9PII|1|a|A|2835

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9PII|1|a|G|2812
9PII|1|a|A|2813
9PII|1|a|A|2814
9PII|1|a|C|2815
*
9PII|1|a|G|2831
9PII|1|a|U|2832
9PII|1|a|U|2833
9PII|1|a|G|2834
9PII|1|a|A|2835
9PII|1|a|U|2836
*
9PII|1|a|A|2882
9PII|1|a|A|2883
9PII|1|a|U|2884
9PII|1|a|G|2885
9PII|1|a|A|2886
9PII|1|a|A|2887
9PII|1|a|C|2888

Current chains

Chain a

23S rRNA

Nearby chains

Chain d

50S ribosomal protein L3

Chain m

Large ribosomal subunit protein bL17

Chain z

50S ribosomal protein L32