J3_9PIJ_035

3D structure

PDB id

9PIJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome bound to Minocycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GAAC*GUUGAU*AAUGAAC

Length

17 nucleotides

Bulged bases

9PIJ|1|a|U|2833, 9PIJ|1|a|A|2835

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9PIJ|1|a|G|2812
9PIJ|1|a|A|2813
9PIJ|1|a|A|2814
9PIJ|1|a|C|2815
*
9PIJ|1|a|G|2831
9PIJ|1|a|U|2832
9PIJ|1|a|U|2833
9PIJ|1|a|G|2834
9PIJ|1|a|A|2835
9PIJ|1|a|U|2836
*
9PIJ|1|a|A|2882
9PIJ|1|a|A|2883
9PIJ|1|a|U|2884
9PIJ|1|a|G|2885
9PIJ|1|a|A|2886
9PIJ|1|a|A|2887
9PIJ|1|a|C|2888

Current chains

Chain a

23S rRNA

Nearby chains

Chain d

50S ribosomal protein L3

Chain m

Large ribosomal subunit protein bL17

Chain z

50S ribosomal protein L32