J3_9PJ8_002
3D structure
- PDB id
- 9PJ8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- C. acnes 70S ribosome bound to Sarecycline
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.5 Å
Loop
- Sequence
- GCUUAAC*GGGGAAUAU*AGC
- Length
- 19 nucleotides
- Bulged bases
- 9PJ8|1|A|U|52, 9PJ8|1|A|A|55
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9PJ8_002 not in the Motif Atlas
- Homologous match to J3_6CZR_058
- Geometric discrepancy: 0.1265
- The information below is about J3_6CZR_058
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_46317.3
- Basepair signature
- cWW-cWW-cSW-cWS-tHW-cWW-cWW-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
9PJ8|1|A|G|50
9PJ8|1|A|C|51
9PJ8|1|A|U|52
9PJ8|1|A|U|53
9PJ8|1|A|A|54
9PJ8|1|A|A|55
9PJ8|1|A|C|56
*
9PJ8|1|A|G|361
9PJ8|1|A|G|362
9PJ8|1|A|G|363
9PJ8|1|A|G|364
9PJ8|1|A|A|365
9PJ8|1|A|A|366
9PJ8|1|A|U|367
9PJ8|1|A|A|368
9PJ8|1|A|U|369
*
9PJ8|1|A|A|395
9PJ8|1|A|G|396
9PJ8|1|A|C|397
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain L
- 30S ribosomal protein S12
- Chain P
- 30S ribosomal protein S16
Coloring options: