J3_9PJ8_019
3D structure
- PDB id
- 9PJ8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- C. acnes 70S ribosome bound to Sarecycline
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.5 Å
Loop
- Sequence
- CUUG*CGAUAGUGGAUGAGUAC*GGAAGG
- Length
- 27 nucleotides
- Bulged bases
- 9PJ8|1|a|U|33, 9PJ8|1|a|U|537, 9PJ8|1|a|G|545
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9PJ8_019 not in the Motif Atlas
- Homologous match to J3_7A0S_016
- Geometric discrepancy: 0.4022
- The information below is about J3_7A0S_016
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_07616.3
- Basepair signature
- cWW-cSS-tSS-tSW-tHW-cWW-tWH-F-F-tHH-tSS-tWH-F-tHS-cWW-F-cSH
- Number of instances in this motif group
- 11
Unit IDs
9PJ8|1|a|C|31
9PJ8|1|a|U|32
9PJ8|1|a|U|33
9PJ8|1|a|G|34
*
9PJ8|1|a|C|534
9PJ8|1|a|G|535
9PJ8|1|a|A|536
9PJ8|1|a|U|537
9PJ8|1|a|A|538
9PJ8|1|a|G|539
9PJ8|1|a|U|540
9PJ8|1|a|G|541
9PJ8|1|a|G|542
9PJ8|1|a|A|543
9PJ8|1|a|U|544
9PJ8|1|a|G|545
9PJ8|1|a|A|546
9PJ8|1|a|G|547
9PJ8|1|a|U|548
9PJ8|1|a|A|549
9PJ8|1|a|C|550
*
9PJ8|1|a|G|557
9PJ8|1|a|G|558
9PJ8|1|a|A|559
9PJ8|1|a|A|560
9PJ8|1|a|G|561
9PJ8|1|a|G|562
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain 1
- 50S ribosomal protein L34
- Chain e
- 50S ribosomal protein L4
- Chain p
- 50S ribosomal protein L20
- Chain s
- 50S ribosomal protein L23
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