J3_9PJ8_022

3D structure

PDB id

9PJ8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

C. acnes 70S ribosome bound to Sarecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

UGUGGUUCU*AGGAUUGGCCAGUGAGAAAUG*CUGGUGUG

Length

38 nucleotides

Bulged bases

9PJ8|1|a|A|366, 9PJ8|1|a|U|369

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9PJ8|1|a|U|333
9PJ8|1|a|G|334
9PJ8|1|a|U|335
9PJ8|1|a|G|336
9PJ8|1|a|G|337
9PJ8|1|a|U|338
9PJ8|1|a|U|339
9PJ8|1|a|C|340
9PJ8|1|a|U|341
*
9PJ8|1|a|A|350
9PJ8|1|a|G|351
9PJ8|1|a|G|352
9PJ8|1|a|A|353
9PJ8|1|a|U|354
9PJ8|1|a|U|355
9PJ8|1|a|G|356
9PJ8|1|a|G|357
9PJ8|1|a|C|358
9PJ8|1|a|C|359
9PJ8|1|a|A|360
9PJ8|1|a|G|361
9PJ8|1|a|U|362
9PJ8|1|a|G|363
9PJ8|1|a|A|364
9PJ8|1|a|G|365
9PJ8|1|a|A|366
9PJ8|1|a|A|367
9PJ8|1|a|A|368
9PJ8|1|a|U|369
9PJ8|1|a|G|370
*
9PJ8|1|a|C|441
9PJ8|1|a|U|442
9PJ8|1|a|G|443
9PJ8|1|a|G|444
9PJ8|1|a|U|445
9PJ8|1|a|G|446
9PJ8|1|a|U|447
9PJ8|1|a|G|448

Current chains

Chain a

23S rRNA

Nearby chains