J3_9PJ8_026

3D structure

PDB id

9PJ8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

C. acnes 70S ribosome bound to Sarecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

GGAGGUUG*CAUCCUUGAAAG*CAC

Length

23 nucleotides

Bulged bases

9PJ8|1|a|U|1144

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9PJ8|1|a|G|1138
9PJ8|1|a|G|1139
9PJ8|1|a|A|1140
9PJ8|1|a|G|1141
9PJ8|1|a|G|1142
9PJ8|1|a|U|1143
9PJ8|1|a|U|1144
9PJ8|1|a|G|1145
*
9PJ8|1|a|C|1159
9PJ8|1|a|A|1160
9PJ8|1|a|U|1161
9PJ8|1|a|C|1162
9PJ8|1|a|C|1163
9PJ8|1|a|U|1164
9PJ8|1|a|U|1165
9PJ8|1|a|G|1166
9PJ8|1|a|A|1167
9PJ8|1|a|A|1168
9PJ8|1|a|A|1169
9PJ8|1|a|G|1170
*
9PJ8|1|a|C|1185
9PJ8|1|a|A|1186
9PJ8|1|a|C|1187

Current chains

Chain a

23S rRNA

Nearby chains

Chain 3

50S ribosomal protein L36

Chain l

50S ribosomal protein L16

Chain u

50S ribosomal protein L25