J3_9PJ9_019
3D structure
- PDB id
- 9PJ9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- C. acnes 70S ribosome bound to Minocycline
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.5 Å
Loop
- Sequence
- GC*GUGAAAAGUAC*GAGUGAAAGAGUUCC
- Length
- 28 nucleotides
- Bulged bases
- 9PJ9|1|a|G|592, 9PJ9|1|a|U|596
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9PJ9_019 not in the Motif Atlas
- Homologous match to J3_7A0S_015
- Geometric discrepancy: 0.2627
- The information below is about J3_7A0S_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17917.2
- Basepair signature
- cWW-tWH-cSS-cWW-tSH-tHH-cWW-F-F-tWW-tSS-cSS-tWW-tSH-tWH-cSW-F-tHS-cWW-F
- Number of instances in this motif group
- 10
Unit IDs
9PJ9|1|a|G|29
9PJ9|1|a|C|30
*
9PJ9|1|a|G|563
9PJ9|1|a|U|564
9PJ9|1|a|G|565
9PJ9|1|a|A|566
9PJ9|1|a|A|567
9PJ9|1|a|A|568
9PJ9|1|a|A|569
9PJ9|1|a|G|570
9PJ9|1|a|U|571
9PJ9|1|a|A|572
9PJ9|1|a|C|573
*
9PJ9|1|a|G|584
9PJ9|1|a|A|585
9PJ9|1|a|G|586
9PJ9|1|a|U|587
9PJ9|1|a|G|588
9PJ9|1|a|A|589
9PJ9|1|a|A|590
9PJ9|1|a|A|591
9PJ9|1|a|G|592
9PJ9|1|a|A|593
9PJ9|1|a|G|594
9PJ9|1|a|U|595
9PJ9|1|a|U|596
9PJ9|1|a|C|597
9PJ9|1|a|C|598
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain p
- 50S ribosomal protein L20
- Chain r
- 50S ribosomal protein L22
- Chain t
- Large ribosomal subunit protein uL24
Coloring options: