J3_9PJ9_025
3D structure
- PDB id
- 9PJ9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- C. acnes 70S ribosome bound to Minocycline
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.5 Å
Loop
- Sequence
- UGAUCUA*UAG*CAAA
- Length
- 14 nucleotides
- Bulged bases
- 9PJ9|1|a|U|771, 9PJ9|1|a|A|877, 9PJ9|1|a|A|878
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9PJ9_025 not in the Motif Atlas
- Homologous match to J3_7A0S_004
- Geometric discrepancy: 0.1529
- The information below is about J3_7A0S_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_46658.3
- Basepair signature
- cWW-tWH-cWW-tSW-F-F-cWW
- Number of instances in this motif group
- 11
Unit IDs
9PJ9|1|a|U|768
9PJ9|1|a|G|769
9PJ9|1|a|A|770
9PJ9|1|a|U|771
9PJ9|1|a|C|772
9PJ9|1|a|U|773
9PJ9|1|a|A|774
*
9PJ9|1|a|U|858
9PJ9|1|a|A|859
9PJ9|1|a|G|860
*
9PJ9|1|a|C|876
9PJ9|1|a|A|877
9PJ9|1|a|A|878
9PJ9|1|a|A|879
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain 1
- 50S ribosomal protein L34
- Chain c
- 50S ribosomal protein L2
Coloring options: