J3_9PKB_002

3D structure

PDB id

9PKB (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ HHT and CHX treated human hibernating state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

CAAG*CCCAGCCCGUGGAC*GGUAG

Length

23 nucleotides

Bulged bases

9PKB|1|L5|A|218, 9PKB|1|L5|G|219, 9PKB|1|L5|U|224

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9PKB|1|L5|C|196
9PKB|1|L5|A|197
9PKB|1|L5|A|198
9PKB|1|L5|G|199
*
9PKB|1|L5|C|215
9PKB|1|L5|C|216
9PKB|1|L5|C|217
9PKB|1|L5|A|218
9PKB|1|L5|G|219
9PKB|1|L5|C|220
9PKB|1|L5|C|221
9PKB|1|L5|C|222
9PKB|1|L5|G|223
9PKB|1|L5|U|224
9PKB|1|L5|G|225
9PKB|1|L5|G|226
9PKB|1|L5|A|227
9PKB|1|L5|C|228
*
9PKB|1|L5|G|240
9PKB|1|L5|G|241
9PKB|1|L5|U|242
9PKB|1|L5|A|243
9PKB|1|L5|G|244

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LC

60S ribosomal protein L4

Chain LY

60S ribosomal protein L26