J3_9PKB_007

3D structure

PDB id

9PKB (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ HHT and CHX treated human hibernating state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

CC*GAGGGAGCGAGACCCGUCGCCG*CACGGGG

Length

31 nucleotides

Bulged bases

9PKB|1|L5|G|959, 9PKB|1|L5|C|962, 9PKB|1|L5|G|965, 9PKB|1|L5|C|967, 9PKB|1|L5|C|968, 9PKB|1|L5|C|969, 9PKB|1|L5|U|971, 9PKB|1|L5|C|1280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9PKB|1|L5|C|712
9PKB|1|L5|C|713
*
9PKB|1|L5|G|955
9PKB|1|L5|A|956
9PKB|1|L5|G|957
9PKB|1|L5|G|958
9PKB|1|L5|G|959
9PKB|1|L5|A|960
9PKB|1|L5|G|961
9PKB|1|L5|C|962
9PKB|1|L5|G|963
9PKB|1|L5|A|964
9PKB|1|L5|G|965
9PKB|1|L5|A|966
9PKB|1|L5|C|967
9PKB|1|L5|C|968
9PKB|1|L5|C|969
9PKB|1|L5|G|970
9PKB|1|L5|U|971
9PKB|1|L5|C|972
9PKB|1|L5|G|973
9PKB|1|L5|C|974
9PKB|1|L5|C|975
9PKB|1|L5|G|976
*
9PKB|1|L5|C|1278
9PKB|1|L5|A|1279
9PKB|1|L5|C|1280
9PKB|1|L5|G|1281
9PKB|1|L5|G|1282
9PKB|1|L5|G|1283
9PKB|1|L5|G|1284

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LC

60S ribosomal protein L4

Chain LE

Large ribosomal subunit protein eL6

Chain LF

60S ribosomal protein L7

Chain Le

60S ribosomal protein L32