J3_9PKB_012
3D structure
- PDB id
- 9PKB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ HHT and CHX treated human hibernating state 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.05 Å
Loop
- Sequence
- CAGUCGAGAGUGGACGGGAGCGGC*GAGCCC*GGACGCUACG
- Length
- 40 nucleotides
- Bulged bases
- 9PKB|1|L5|U|2097, 9PKB|1|L5|C|2255, 9PKB|1|L5|C|2266, 9PKB|1|L5|U|2267, 9PKB|1|L5|C|2269
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9PKB|1|L5|C|2087
9PKB|1|L5|A|2088
9PKB|1|L5|G|2089
9PKB|1|L5|U|2090
9PKB|1|L5|C|2091
9PKB|1|L5|G|2092
9PKB|1|L5|A|2093
9PKB|1|L5|G|2094
9PKB|1|L5|A|2095
9PKB|1|L5|G|2096
9PKB|1|L5|U|2097
9PKB|1|L5|G|2098
9PKB|1|L5|G|2099
9PKB|1|L5|A|2100
9PKB|1|L5|C|2101
9PKB|1|L5|G|2102
9PKB|1|L5|G|2103
9PKB|1|L5|G|2104
9PKB|1|L5|A|2105
9PKB|1|L5|G|2106
9PKB|1|L5|C|2107
9PKB|1|L5|G|2108
9PKB|1|L5|G|2109
9PKB|1|L5|C|2110
*
9PKB|1|L5|G|2252
9PKB|1|L5|A|2253
9PKB|1|L5|G|2254
9PKB|1|L5|C|2255
9PKB|1|L5|C|2256
9PKB|1|L5|C|2257
*
9PKB|1|L5|G|2261
9PKB|1|L5|G|2262
9PKB|1|L5|A|2263
9PKB|1|L5|C|2264
9PKB|1|L5|G|2265
9PKB|1|L5|C|2266
9PKB|1|L5|U|2267
9PKB|1|L5|A|2268
9PKB|1|L5|C|2269
9PKB|1|L5|G|2270
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain LC
- 60S ribosomal protein L4
- Chain LE
- Large ribosomal subunit protein eL6
- Chain LF
- 60S ribosomal protein L7
- Chain LQ
- 60S ribosomal protein L18
- Chain Lb
- Large ribosomal subunit protein eL29
- Chain Lr
- 60S ribosomal protein L28
Coloring options: