J3_9PKB_021

3D structure

PDB id

9PKB (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ HHT and CHX treated human hibernating state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

GGGGGCG*CUCGCUUCUGGCGCCAAG*CGAC

Length

29 nucleotides

Bulged bases

9PKB|1|L5|C|4114, 9PKB|1|L5|G|4115, 9PKB|1|L5|C|4116, 9PKB|1|L5|U|4117, 9PKB|1|L5|U|4118, 9PKB|1|L5|C|4119, 9PKB|1|L5|U|4120, 9PKB|1|L5|G|4121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9PKB|1|L5|G|4091
9PKB|1|L5|G|4092
9PKB|1|L5|G|4093
9PKB|1|L5|G|4094
9PKB|1|L5|G|4095
9PKB|1|L5|C|4096
9PKB|1|L5|G|4097
*
9PKB|1|L5|C|4112
9PKB|1|L5|U|4113
9PKB|1|L5|C|4114
9PKB|1|L5|G|4115
9PKB|1|L5|C|4116
9PKB|1|L5|U|4117
9PKB|1|L5|U|4118
9PKB|1|L5|C|4119
9PKB|1|L5|U|4120
9PKB|1|L5|G|4121
9PKB|1|L5|G|4122
9PKB|1|L5|C|4123
9PKB|1|L5|G|4124
9PKB|1|L5|C|4125
9PKB|1|L5|C|4126
9PKB|1|L5|A|4127
9PKB|1|L5|A|4128
9PKB|1|L5|G|4129
*
9PKB|1|L5|C|4155
9PKB|1|L5|G|4156
9PKB|1|L5|A|4157
9PKB|1|L5|C|4158

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LA

60S ribosomal protein L8

Chain LG

60S ribosomal protein L7a

Chain LX

60S ribosomal protein L23a

Chain LZ

60S ribosomal protein L27

Chain Lc

60S ribosomal protein L30

Chain Lg

60S ribosomal protein L34

Chain Lp

60S ribosomal protein L37a

Chain SB

40S ribosomal protein S3a