J3_9PKB_022
3D structure
- PDB id
- 9PKB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ HHT and CHX treated human hibernating state 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.05 Å
Loop
- Sequence
- (OMG)UC*GCCUCACGAUCC*(OMG)GUGUC
- Length
- 21 nucleotides
- Bulged bases
- 9PKB|1|L5|U|4374
- QA status
- Modified nucleotides: OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9PKB|1|L5|OMG|4228
9PKB|1|L5|U|4229
9PKB|1|L5|C|4230
*
9PKB|1|L5|G|4331
9PKB|1|L5|C|4332
9PKB|1|L5|C|4333
9PKB|1|L5|U|4334
9PKB|1|L5|C|4335
9PKB|1|L5|A|4336
9PKB|1|L5|C|4337
9PKB|1|L5|G|4338
9PKB|1|L5|A|4339
9PKB|1|L5|U|4340
9PKB|1|L5|C|4341
9PKB|1|L5|C|4342
*
9PKB|1|L5|OMG|4370
9PKB|1|L5|G|4371
9PKB|1|L5|U|4372
9PKB|1|L5|G|4373
9PKB|1|L5|U|4374
9PKB|1|L5|C|4375
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain LQ
- 60S ribosomal protein L18
- Chain LT
- 60S ribosomal protein L21
- Chain La
- 60S ribosomal protein L27a
- Chain Lo
- 60S ribosomal protein L36a
Coloring options: