J3_9PKB_038
3D structure
- PDB id
- 9PKB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ HHT and CHX treated human hibernating state 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.05 Å
Loop
- Sequence
- CUUAAUU(PSU)*GGGAAACCUCAC*GGCUG
- Length
- 25 nucleotides
- Bulged bases
- 9PKB|1|S2|G|1256, 9PKB|1|S2|A|1258, 9PKB|1|S2|A|1260
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9PKB|1|S2|C|1237
9PKB|1|S2|U|1238
9PKB|1|S2|U|1239
9PKB|1|S2|A|1240
9PKB|1|S2|A|1241
9PKB|1|S2|U|1242
9PKB|1|S2|U|1243
9PKB|1|S2|PSU|1244
*
9PKB|1|S2|G|1255
9PKB|1|S2|G|1256
9PKB|1|S2|G|1257
9PKB|1|S2|A|1258
9PKB|1|S2|A|1259
9PKB|1|S2|A|1260
9PKB|1|S2|C|1261
9PKB|1|S2|C|1262
9PKB|1|S2|U|1263
9PKB|1|S2|C|1264
9PKB|1|S2|A|1265
9PKB|1|S2|C|1266
*
9PKB|1|S2|G|1516
9PKB|1|S2|G|1517
9PKB|1|S2|C|1518
9PKB|1|S2|U|1519
9PKB|1|S2|G|1520
Current chains
- Chain S2
- 18S rRNA
Nearby chains
- Chain SP
- Small ribosomal subunit protein uS19
- Chain SS
- 40S ribosomal protein S18
- Chain SU
- 40S ribosomal protein S20
- Chain Sd
- 40S ribosomal protein S29
Coloring options: