J3_9PKD_006
3D structure
- PDB id
- 9PKD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ CHX and HHT treated 80S consensus ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.42 Å
Loop
- Sequence
- CAGUC*GUGCG*CGACG
- Length
- 15 nucleotides
- Bulged bases
- 9PKD|1|L5|C|704, 9PKD|1|L5|C|1295
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9PKD|1|L5|C|451
9PKD|1|L5|A|452
9PKD|1|L5|G|453
9PKD|1|L5|U|454
9PKD|1|L5|C|455
*
9PKD|1|L5|G|701
9PKD|1|L5|U|702
9PKD|1|L5|G|703
9PKD|1|L5|C|704
9PKD|1|L5|G|705
*
9PKD|1|L5|C|1292
9PKD|1|L5|G|1293
9PKD|1|L5|A|1294
9PKD|1|L5|C|1295
9PKD|1|L5|G|1296
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain LE
- Large ribosomal subunit protein eL6
- Chain Le
- 60S ribosomal protein L32
- Chain Lf
- 60S ribosomal protein L35a
- Chain Lr
- 60S ribosomal protein L28
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