J3_9PKD_007
3D structure
- PDB id
- 9PKD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ CHX and HHT treated 80S consensus ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.42 Å
Loop
- Sequence
- CC*GAGGGAGCGAGACCCGUCGCCG*CACGGGG
- Length
- 31 nucleotides
- Bulged bases
- 9PKD|1|L5|G|959, 9PKD|1|L5|G|965, 9PKD|1|L5|C|967, 9PKD|1|L5|U|971, 9PKD|1|L5|C|1280
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9PKD|1|L5|C|712
9PKD|1|L5|C|713
*
9PKD|1|L5|G|955
9PKD|1|L5|A|956
9PKD|1|L5|G|957
9PKD|1|L5|G|958
9PKD|1|L5|G|959
9PKD|1|L5|A|960
9PKD|1|L5|G|961
9PKD|1|L5|C|962
9PKD|1|L5|G|963
9PKD|1|L5|A|964
9PKD|1|L5|G|965
9PKD|1|L5|A|966
9PKD|1|L5|C|967
9PKD|1|L5|C|968
9PKD|1|L5|C|969
9PKD|1|L5|G|970
9PKD|1|L5|U|971
9PKD|1|L5|C|972
9PKD|1|L5|G|973
9PKD|1|L5|C|974
9PKD|1|L5|C|975
9PKD|1|L5|G|976
*
9PKD|1|L5|C|1278
9PKD|1|L5|A|1279
9PKD|1|L5|C|1280
9PKD|1|L5|G|1281
9PKD|1|L5|G|1282
9PKD|1|L5|G|1283
9PKD|1|L5|G|1284
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain LC
- 60S ribosomal protein L4
- Chain LE
- Large ribosomal subunit protein eL6
- Chain LF
- 60S ribosomal protein L7
- Chain Le
- 60S ribosomal protein L32
Coloring options: