J3_9PKD_012
3D structure
- PDB id
- 9PKD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ CHX and HHT treated 80S consensus ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.42 Å
Loop
- Sequence
- CAGUCGAGAGUGGACGGGAGCGGC*GAGCCC*GGACGCUACG
- Length
- 40 nucleotides
- Bulged bases
- 9PKD|1|L5|U|2097, 9PKD|1|L5|C|2255, 9PKD|1|L5|C|2266, 9PKD|1|L5|U|2267, 9PKD|1|L5|C|2269
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9PKD|1|L5|C|2087
9PKD|1|L5|A|2088
9PKD|1|L5|G|2089
9PKD|1|L5|U|2090
9PKD|1|L5|C|2091
9PKD|1|L5|G|2092
9PKD|1|L5|A|2093
9PKD|1|L5|G|2094
9PKD|1|L5|A|2095
9PKD|1|L5|G|2096
9PKD|1|L5|U|2097
9PKD|1|L5|G|2098
9PKD|1|L5|G|2099
9PKD|1|L5|A|2100
9PKD|1|L5|C|2101
9PKD|1|L5|G|2102
9PKD|1|L5|G|2103
9PKD|1|L5|G|2104
9PKD|1|L5|A|2105
9PKD|1|L5|G|2106
9PKD|1|L5|C|2107
9PKD|1|L5|G|2108
9PKD|1|L5|G|2109
9PKD|1|L5|C|2110
*
9PKD|1|L5|G|2252
9PKD|1|L5|A|2253
9PKD|1|L5|G|2254
9PKD|1|L5|C|2255
9PKD|1|L5|C|2256
9PKD|1|L5|C|2257
*
9PKD|1|L5|G|2261
9PKD|1|L5|G|2262
9PKD|1|L5|A|2263
9PKD|1|L5|C|2264
9PKD|1|L5|G|2265
9PKD|1|L5|C|2266
9PKD|1|L5|U|2267
9PKD|1|L5|A|2268
9PKD|1|L5|C|2269
9PKD|1|L5|G|2270
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain LC
- 60S ribosomal protein L4
- Chain LE
- Large ribosomal subunit protein eL6
- Chain LF
- 60S ribosomal protein L7
- Chain LQ
- 60S ribosomal protein L18
- Chain Lb
- Large ribosomal subunit protein eL29
- Chain Lr
- 60S ribosomal protein L28
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