J3_9PKD_038
3D structure
- PDB id
- 9PKD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ CHX and HHT treated 80S consensus ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.42 Å
Loop
- Sequence
- (OMC)CGGAC*GGGUG*UUAGAUG
- Length
- 18 nucleotides
- Bulged bases
- 9PKD|1|S2|G|1274, 9PKD|1|S2|G|1507, 9PKD|1|S2|U|1509
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9PKD_038 not in the Motif Atlas
- Homologous match to J3_9H3G_038
- Geometric discrepancy: 0.1207
- The information below is about J3_9H3G_038
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_87797.4
- Basepair signature
- cWW-tWH-F-F-tHS-cWW-cWW-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
9PKD|1|S2|OMC|1272
9PKD|1|S2|C|1273
9PKD|1|S2|G|1274
9PKD|1|S2|G|1275
9PKD|1|S2|A|1276
9PKD|1|S2|C|1277
*
9PKD|1|S2|G|1320
9PKD|1|S2|G|1321
9PKD|1|S2|G|1322
9PKD|1|S2|U|1323
9PKD|1|S2|G|1324
*
9PKD|1|S2|U|1504
9PKD|1|S2|U|1505
9PKD|1|S2|A|1506
9PKD|1|S2|G|1507
9PKD|1|S2|A|1508
9PKD|1|S2|U|1509
9PKD|1|S2|G|1510
Current chains
- Chain S2
- 18S rRNA
Nearby chains
- Chain SK
- 40S ribosomal protein S10
- Chain Sd
- 40S ribosomal protein S29
- Chain Sf
- Ubiquitin-40S ribosomal protein S27a
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