J3_9PKD_041
3D structure
- PDB id
- 9PKD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ CHX and HHT treated 80S consensus ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.42 Å
Loop
- Sequence
- (OMC)UGGC*GGACAAG*CCCGAGAUUG
- Length
- 22 nucleotides
- Bulged bases
- 9PKD|1|S2|U|1477
- QA status
- Modified nucleotides: OMC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9PKD|1|S2|OMC|1391
9PKD|1|S2|U|1392
9PKD|1|S2|G|1393
9PKD|1|S2|G|1394
9PKD|1|S2|C|1395
*
9PKD|1|S2|G|1450
9PKD|1|S2|G|1451
9PKD|1|S2|A|1452
9PKD|1|S2|C|1453
9PKD|1|S2|A|1454
9PKD|1|S2|A|1455
9PKD|1|S2|G|1456
*
9PKD|1|S2|C|1470
9PKD|1|S2|C|1471
9PKD|1|S2|C|1472
9PKD|1|S2|G|1473
9PKD|1|S2|A|1474
9PKD|1|S2|G|1475
9PKD|1|S2|A|1476
9PKD|1|S2|U|1477
9PKD|1|S2|U|1478
9PKD|1|S2|G|1479
Current chains
- Chain S2
- 18S rRNA
Nearby chains
- Chain SD
- Small ribosomal subunit protein uS3
- Chain SF
- 40S ribosomal protein S5
- Chain SQ
- Small ribosomal subunit protein uS9
- Chain SR
- Small ribosomal subunit protein eS17
- Chain SU
- 40S ribosomal protein S20
- Chain Sd
- 40S ribosomal protein S29
- Chain Sg
- Receptor of activated protein C kinase 1
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