J3_9PN5_001
3D structure
- PDB id
- 9PN5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Composite map of hypomethylated 80S ribosome treated with hygromycin B
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.75 Å
Loop
- Sequence
- CAAAUUUGAAA*UAAUUUGGAG*CGAAG
- Length
- 26 nucleotides
- Bulged bases
- 9PN5|1|A1|U|117, 9PN5|1|A1|G|120, 9PN5|1|A1|A|121, 9PN5|1|A1|G|156
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_69230.3
- Basepair signature
- cWW-tHW-F-F-F-F-tHS-F-cWW-F-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
9PN5|1|A1|C|113
9PN5|1|A1|A|114
9PN5|1|A1|A|115
9PN5|1|A1|A|116
9PN5|1|A1|U|117
9PN5|1|A1|U|118
9PN5|1|A1|U|119
9PN5|1|A1|G|120
9PN5|1|A1|A|121
9PN5|1|A1|A|122
9PN5|1|A1|A|123
*
9PN5|1|A1|U|149
9PN5|1|A1|A|150
9PN5|1|A1|A|151
9PN5|1|A1|U|152
9PN5|1|A1|U|153
9PN5|1|A1|U|154
9PN5|1|A1|G|155
9PN5|1|A1|G|156
9PN5|1|A1|A|157
9PN5|1|A1|G|158
*
9PN5|1|A1|C|263
9PN5|1|A1|G|264
9PN5|1|A1|A|265
9PN5|1|A1|A|266
9PN5|1|A1|G|267
Current chains
- Chain A1
- 25S rRNA
Nearby chains
- Chain AG
- Large ribosomal subunit protein eL8A
- Chain AL
- 60S ribosomal protein L13-A
- Chain AN
- Large ribosomal subunit protein eL15A
- Chain Ah
- 60S ribosomal protein L35-A
- Chain Ai
- 60S ribosomal protein L36-A
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