J3_9PN5_009

3D structure

PDB id

9PN5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Composite map of hypomethylated 80S ribosome treated with hygromycin B

Experimental method

ELECTRON MICROSCOPY

Resolution

1.75 Å

Loop

Sequence

UAG*CGUAG*UCGA

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_69816.3

Basepair signature

cWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

11

Unit IDs

9PN5|1|A1|U|829
9PN5|1|A1|A|830
9PN5|1|A1|G|831
*
9PN5|1|A1|C|863
9PN5|1|A1|G|864
9PN5|1|A1|U|865
9PN5|1|A1|A|866
9PN5|1|A1|G|867
*
9PN5|1|A1|U|892
9PN5|1|A1|C|893
9PN5|1|A1|G|894
9PN5|1|A1|A|895

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AA

60S ribosomal protein L2-A

Chain AR

60S ribosomal protein L19-A

Chain Ag

60S ribosomal protein L34-A