J3_9PN5_011

3D structure

PDB id

9PN5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Composite map of hypomethylated 80S ribosome treated with hygromycin B

Experimental method

ELECTRON MICROSCOPY

Resolution

1.75 Å

Loop

Sequence

GACGG*CGCUAAGG*CAC

Length

16 nucleotides

Bulged bases

9PN5|1|A1|A|1231, 9PN5|1|A1|G|1233, 9PN5|1|A1|U|1258

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9PN5|1|A1|G|1230
9PN5|1|A1|A|1231
9PN5|1|A1|C|1232
9PN5|1|A1|G|1233
9PN5|1|A1|G|1234
*
9PN5|1|A1|C|1255
9PN5|1|A1|G|1256
9PN5|1|A1|C|1257
9PN5|1|A1|U|1258
9PN5|1|A1|A|1259
9PN5|1|A1|A|1260
9PN5|1|A1|G|1261
9PN5|1|A1|G|1262
*
9PN5|1|A1|C|1277
9PN5|1|A1|A|1278
9PN5|1|A1|C|1279

Current chains

Chain A1

25S rRNA

Nearby chains