J3_9PN5_012

3D structure

PDB id

9PN5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Composite map of hypomethylated 80S ribosome treated with hygromycin B

Experimental method

ELECTRON MICROSCOPY

Resolution

1.75 Å

Loop

Sequence

UGAAGUG*CAA*UCUA

Length

14 nucleotides

Bulged bases

9PN5|1|A1|A|1482, 9PN5|1|A1|U|1484

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_05025.3

Basepair signature

cWW-tSH-tWW-tHW-cWW-F-cWW-F

Number of instances in this motif group

5

Unit IDs

9PN5|1|A1|U|1479
9PN5|1|A1|G|1480
9PN5|1|A1|A|1481
9PN5|1|A1|A|1482
9PN5|1|A1|G|1483
9PN5|1|A1|U|1484
9PN5|1|A1|G|1485
*
9PN5|1|A1|C|1857
9PN5|1|A1|A|1858
9PN5|1|A1|A|1859
*
9PN5|1|A1|U|1871
9PN5|1|A1|C|1872
9PN5|1|A1|U|1873
9PN5|1|A1|A|1874

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AR

60S ribosomal protein L19-A

Chain Ag

60S ribosomal protein L34-A