J3_9PN5_021
3D structure
- PDB id
- 9PN5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Composite map of hypomethylated 80S ribosome treated with hygromycin B
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.75 Å
Loop
- Sequence
- CUC*GAA*UAAAAG
- Length
- 12 nucleotides
- Bulged bases
- 9PN5|1|A1|A|2703, 9PN5|1|A1|A|2705
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_05327.3
- Basepair signature
- cWW-tWH-tWW-cWW-F-cWW
- Number of instances in this motif group
- 11
Unit IDs
9PN5|1|A1|C|2664
9PN5|1|A1|U|2665
9PN5|1|A1|C|2666
*
9PN5|1|A1|G|2690
9PN5|1|A1|A|2691
9PN5|1|A1|A|2692
*
9PN5|1|A1|U|2701
9PN5|1|A1|A|2702
9PN5|1|A1|A|2703
9PN5|1|A1|A|2704
9PN5|1|A1|A|2705
9PN5|1|A1|G|2706
Current chains
- Chain A1
- 25S rRNA
Nearby chains
- Chain A3
- 5S ribosomal RNA; 5S rRNA
- Chain AD
- 60S ribosomal protein L5
- Chain AJ
- 60S ribosomal protein L11-A
- Chain AT
- 60S ribosomal protein L21-A
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