J3_9PN5_023
3D structure
- PDB id
- 9PN5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Composite map of hypomethylated 80S ribosome treated with hygromycin B
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.75 Å
Loop
- Sequence
- UAGAUG*CAUAGCAGG*CGAAUUGCAAUGUCA
- Length
- 30 nucleotides
- Bulged bases
- 9PN5|1|A1|A|3172, 9PN5|1|A1|G|3173, 9PN5|1|A1|A|3215, 9PN5|1|A1|G|3216, 9PN5|1|A1|G|3219, 9PN5|1|A1|A|3268, 9PN5|1|A1|U|3270, 9PN5|1|A1|C|3272
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9PN5|1|A1|U|3171
9PN5|1|A1|A|3172
9PN5|1|A1|G|3173
9PN5|1|A1|A|3174
9PN5|1|A1|U|3175
9PN5|1|A1|G|3176
*
9PN5|1|A1|C|3212
9PN5|1|A1|A|3213
9PN5|1|A1|U|3214
9PN5|1|A1|A|3215
9PN5|1|A1|G|3216
9PN5|1|A1|C|3217
9PN5|1|A1|A|3218
9PN5|1|A1|G|3219
9PN5|1|A1|G|3220
*
9PN5|1|A1|C|3265
9PN5|1|A1|G|3266
9PN5|1|A1|A|3267
9PN5|1|A1|A|3268
9PN5|1|A1|U|3269
9PN5|1|A1|U|3270
9PN5|1|A1|G|3271
9PN5|1|A1|C|3272
9PN5|1|A1|A|3273
9PN5|1|A1|A|3274
9PN5|1|A1|U|3275
9PN5|1|A1|G|3276
9PN5|1|A1|U|3277
9PN5|1|A1|C|3278
9PN5|1|A1|A|3279
Current chains
- Chain A1
- 25S rRNA
Nearby chains
- Chain AE
- Large ribosomal subunit protein eL6A
- Chain AM
- 60S ribosomal protein L14-A
- Chain AO
- Large ribosomal subunit protein uL13A
- Chain AP
- 60S ribosomal protein L17-A
- Chain Af
- 60S ribosomal protein L33-A
Coloring options: