J3_9PN5_024

3D structure

PDB id

9PN5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Composite map of hypomethylated 80S ribosome treated with hygromycin B

Experimental method

ELECTRON MICROSCOPY

Resolution

1.75 Å

Loop

Sequence

CAU*AGAUG*CUG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9PN5|1|A1|C|3298
9PN5|1|A1|A|3299
9PN5|1|A1|U|3300
*
9PN5|1|A1|A|3314
9PN5|1|A1|G|3315
9PN5|1|A1|A|3316
9PN5|1|A1|U|3317
9PN5|1|A1|G|3318
*
9PN5|1|A1|C|3388
9PN5|1|A1|U|3389
9PN5|1|A1|G|3390

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AB

Large ribosomal subunit protein uL3

Chain AP

60S ribosomal protein L17-A

Chain Ad

60S ribosomal protein L31-A