J3_9PN5_029

3D structure

PDB id

9PN5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Composite map of hypomethylated 80S ribosome treated with hygromycin B

Experimental method

ELECTRON MICROSCOPY

Resolution

1.75 Å

Loop

Sequence

AGAUAAAAAAUCAAUG*CUCUUUG*CAU

Length

26 nucleotides

Bulged bases

9PN5|1|B5|A|217, 9PN5|1|B5|A|218, 9PN5|1|B5|A|219, 9PN5|1|B5|A|220, 9PN5|1|B5|U|223, 9PN5|1|B5|A|226, 9PN5|1|B5|U|227, 9PN5|1|B5|U|238, 9PN5|1|B5|C|239, 9PN5|1|B5|U|240, 9PN5|1|B5|U|241, 9PN5|1|B5|U|242

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9PN5|1|B5|A|213
9PN5|1|B5|G|214
9PN5|1|B5|A|215
9PN5|1|B5|U|216
9PN5|1|B5|A|217
9PN5|1|B5|A|218
9PN5|1|B5|A|219
9PN5|1|B5|A|220
9PN5|1|B5|A|221
9PN5|1|B5|A|222
9PN5|1|B5|U|223
9PN5|1|B5|C|224
9PN5|1|B5|A|225
9PN5|1|B5|A|226
9PN5|1|B5|U|227
9PN5|1|B5|G|228
*
9PN5|1|B5|C|237
9PN5|1|B5|U|238
9PN5|1|B5|C|239
9PN5|1|B5|U|240
9PN5|1|B5|U|241
9PN5|1|B5|U|242
9PN5|1|B5|G|243
*
9PN5|1|B5|C|250
9PN5|1|B5|A|251
9PN5|1|B5|U|252

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BE

Small ribosomal subunit protein eS4A

Chain BG

Small ribosomal subunit protein eS6A

Chain BL

Small ribosomal subunit protein uS17A