J3_9PN5_032

3D structure

PDB id

9PN5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Composite map of hypomethylated 80S ribosome treated with hygromycin B

Experimental method

ELECTRON MICROSCOPY

Resolution

1.75 Å

Loop

Sequence

AGAG*CAG*UCGAAU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_97642.4

Basepair signature

cWW-tSH-F-F-cWW-F-tWW-cWW

Number of instances in this motif group

4

Unit IDs

9PN5|1|B5|A|760
9PN5|1|B5|G|761
9PN5|1|B5|A|762
9PN5|1|B5|G|763
*
9PN5|1|B5|C|773
9PN5|1|B5|A|774
9PN5|1|B5|G|775
*
9PN5|1|B5|U|785
9PN5|1|B5|C|786
9PN5|1|B5|G|787
9PN5|1|B5|A|788
9PN5|1|B5|A|789
9PN5|1|B5|U|790

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BE

Small ribosomal subunit protein eS4A

Chain BJ

Small ribosomal subunit protein uS4A

Chain BY

Small ribosomal subunit protein eS24A