J3_9PN5_033

3D structure

PDB id

9PN5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Composite map of hypomethylated 80S ribosome treated with hygromycin B

Experimental method

ELECTRON MICROSCOPY

Resolution

1.75 Å

Loop

Sequence

AUCA*UAACUACUG*CAUUU

Length

18 nucleotides

Bulged bases

9PN5|1|B5|C|934

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9PN5|1|B5|A|881
9PN5|1|B5|U|882
9PN5|1|B5|C|883
9PN5|1|B5|A|884
*
9PN5|1|B5|U|928
9PN5|1|B5|A|929
9PN5|1|B5|A|930
9PN5|1|B5|C|931
9PN5|1|B5|U|932
9PN5|1|B5|A|933
9PN5|1|B5|C|934
9PN5|1|B5|U|935
9PN5|1|B5|G|936
*
9PN5|1|B5|C|943
9PN5|1|B5|A|944
9PN5|1|B5|U|945
9PN5|1|B5|U|946
9PN5|1|B5|U|947

Current chains

Chain B5

18S rRNA

Nearby chains

Chain Ap

60S ribosomal protein L43-A

Chain BB

Small ribosomal subunit protein eS1A

Chain BN

Small ribosomal subunit protein uS15

Chain BO

Small ribosomal subunit protein uS11A

Chain Ba

Small ribosomal subunit protein eS26B