J3_9PN5_035

3D structure

PDB id

9PN5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Composite map of hypomethylated 80S ribosome treated with hygromycin B

Experimental method

ELECTRON MICROSCOPY

Resolution

1.75 Å

Loop

Sequence

CCAG*CUAGUAA*UGAUUACG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85722.3

Basepair signature

cWW-F-F-cSS-F-cWW-tWW-F-tWH-F-tHS-cSH-cWW

Number of instances in this motif group

6

Unit IDs

9PN5|1|B5|C|1161
9PN5|1|B5|C|1162
9PN5|1|B5|A|1163
9PN5|1|B5|G|1164
*
9PN5|1|B5|C|1581
9PN5|1|B5|U|1582
9PN5|1|B5|A|1583
9PN5|1|B5|G|1584
9PN5|1|B5|U|1585
9PN5|1|B5|A|1586
9PN5|1|B5|A|1587
*
9PN5|1|B5|U|1609
9PN5|1|B5|G|1610
9PN5|1|B5|A|1611
9PN5|1|B5|U|1612
9PN5|1|B5|U|1613
9PN5|1|B5|A|1614
9PN5|1|B5|C|1615
9PN5|1|B5|G|1616

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BF

Small ribosomal subunit protein uS7

Chain BQ

Small ribosomal subunit protein uS9A

Chain Bc

Small ribosomal subunit protein eS28A