J3_9PN5_036

3D structure

PDB id

9PN5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Composite map of hypomethylated 80S ribosome treated with hygromycin B

Experimental method

ELECTRON MICROSCOPY

Resolution

1.75 Å

Loop

Sequence

UGGA*UAC*G(G7M)AA

Length

11 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: G7M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44359.3

Basepair signature

cWW-tSH-cWW-F-cWW-cWW

Number of instances in this motif group

6

Unit IDs

9PN5|1|B5|U|1168
9PN5|1|B5|G|1169
9PN5|1|B5|G|1170
9PN5|1|B5|A|1171
*
9PN5|1|B5|U|1468
9PN5|1|B5|A|1469
9PN5|1|B5|C|1470
*
9PN5|1|B5|G|1574
9PN5|1|B5|G7M|1575
9PN5|1|B5|A|1576
9PN5|1|B5|A|1577

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BF

Small ribosomal subunit protein uS7

Chain BQ

Small ribosomal subunit protein uS9A

Chain BS

Small ribosomal subunit protein uS13A

Chain BT

Small ribosomal subunit protein eS19A