J3_9PN5_038

3D structure

PDB id

9PN5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Composite map of hypomethylated 80S ribosome treated with hygromycin B

Experimental method

ELECTRON MICROSCOPY

Resolution

1.75 Å

Loop

Sequence

CCAGAC*GGGUG*UUAGACG

Length

18 nucleotides

Bulged bases

9PN5|1|B5|A|1217, 9PN5|1|B5|G|1445, 9PN5|1|B5|C|1447

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_87797.4

Basepair signature

cWW-tWH-F-F-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

4

Unit IDs

9PN5|1|B5|C|1215
9PN5|1|B5|C|1216
9PN5|1|B5|A|1217
9PN5|1|B5|G|1218
9PN5|1|B5|A|1219
9PN5|1|B5|C|1220
*
9PN5|1|B5|G|1263
9PN5|1|B5|G|1264
9PN5|1|B5|G|1265
9PN5|1|B5|U|1266
9PN5|1|B5|G|1267
*
9PN5|1|B5|U|1442
9PN5|1|B5|U|1443
9PN5|1|B5|A|1444
9PN5|1|B5|G|1445
9PN5|1|B5|A|1446
9PN5|1|B5|C|1447
9PN5|1|B5|G|1448

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BK

Small ribosomal subunit protein eS10A

Chain BM

Small ribosomal subunit protein eS12

Chain Bd

Small ribosomal subunit protein uS14A

Chain Bf

Ubiquitin-ribosomal protein eS31 fusion protein