J3_9PN5_039
3D structure
- PDB id
- 9PN5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Composite map of hypomethylated 80S ribosome treated with hygromycin B
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.75 Å
Loop
- Sequence
- UCUUAG*CGAGAC*GCAAUA
- Length
- 18 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9PN5|1|B5|U|1283
9PN5|1|B5|C|1284
9PN5|1|B5|U|1285
9PN5|1|B5|U|1286
9PN5|1|B5|A|1287
9PN5|1|B5|G|1288
*
9PN5|1|B5|C|1327
9PN5|1|B5|G|1328
9PN5|1|B5|A|1329
9PN5|1|B5|G|1330
9PN5|1|B5|A|1331
9PN5|1|B5|C|1332
*
9PN5|1|B5|G|1419
9PN5|1|B5|C|1420
9PN5|1|B5|A|1421
9PN5|1|B5|A|1422
9PN5|1|B5|U|1423
9PN5|1|B5|A|1424
Current chains
- Chain B5
- 18S rRNA
Nearby chains
- Chain BC
- Small ribosomal subunit protein uS5
- Chain BD
- Small ribosomal subunit protein uS3
- Chain BQ
- Small ribosomal subunit protein uS9A
- Chain BR
- Small ribosomal subunit protein eS17A
- Chain BU
- Small ribosomal subunit protein uS10
- Chain Bd
- Small ribosomal subunit protein uS14A
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