J3_9PN5_043

3D structure

PDB id

9PN5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Composite map of hypomethylated 80S ribosome treated with hygromycin B

Experimental method

ELECTRON MICROSCOPY

Resolution

1.75 Å

Loop

Sequence

CACUG*CGUGCUGG*CGAG

Length

17 nucleotides

Bulged bases

9PN5|1|B5|U|1473, 9PN5|1|B5|G|1539

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_03192.3

Basepair signature

cWW-cSS-tHW-F-F-F-cWW-cWW-cSH-cSH-F

Number of instances in this motif group

6

Unit IDs

9PN5|1|B5|C|1470
9PN5|1|B5|A|1471
9PN5|1|B5|C|1472
9PN5|1|B5|U|1473
9PN5|1|B5|G|1474
*
9PN5|1|B5|C|1533
9PN5|1|B5|G|1534
9PN5|1|B5|U|1535
9PN5|1|B5|G|1536
9PN5|1|B5|C|1537
9PN5|1|B5|U|1538
9PN5|1|B5|G|1539
9PN5|1|B5|G|1540
*
9PN5|1|B5|C|1571
9PN5|1|B5|G|1572
9PN5|1|B5|A|1573
9PN5|1|B5|G|1574

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BF

Small ribosomal subunit protein uS7

Chain BS

Small ribosomal subunit protein uS13A

Chain BT

Small ribosomal subunit protein eS19A

Chain BZ

Small ribosomal subunit protein eS25A