J3_9PRD_002
3D structure
- PDB id
- 9PRD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ structure of the human mitoribosome in the P state from TACO1-knockout cells
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.31 Å
Loop
- Sequence
- CCAAACCCACUCCACCUUACUACCAGACAACCUUAGCCA*UUACCCAAAUA*UUGAAACCUG
- Length
- 60 nucleotides
- Bulged bases
- 9PRD|1|A|C|1699, 9PRD|1|A|U|1701, 9PRD|1|A|C|1707, 9PRD|1|A|A|1708, 9PRD|1|A|C|1715, 9PRD|1|A|U|1716, 9PRD|1|A|A|1735, 9PRD|1|A|C|1764
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9PRD|1|A|C|1684
9PRD|1|A|C|1685
9PRD|1|A|A|1686
9PRD|1|A|A|1687
9PRD|1|A|A|1688
9PRD|1|A|C|1689
9PRD|1|A|C|1690
9PRD|1|A|C|1691
9PRD|1|A|A|1692
9PRD|1|A|C|1693
9PRD|1|A|U|1694
9PRD|1|A|C|1695
9PRD|1|A|C|1696
9PRD|1|A|A|1697
9PRD|1|A|C|1698
9PRD|1|A|C|1699
9PRD|1|A|U|1700
9PRD|1|A|U|1701
9PRD|1|A|A|1702
9PRD|1|A|C|1703
9PRD|1|A|U|1704
9PRD|1|A|A|1705
9PRD|1|A|C|1706
9PRD|1|A|C|1707
9PRD|1|A|A|1708
9PRD|1|A|G|1709
9PRD|1|A|A|1710
9PRD|1|A|C|1711
9PRD|1|A|A|1712
9PRD|1|A|A|1713
9PRD|1|A|C|1714
9PRD|1|A|C|1715
9PRD|1|A|U|1716
9PRD|1|A|U|1717
9PRD|1|A|A|1718
9PRD|1|A|G|1719
9PRD|1|A|C|1720
9PRD|1|A|C|1721
9PRD|1|A|A|1722
*
9PRD|1|A|U|1729
9PRD|1|A|U|1730
9PRD|1|A|A|1731
9PRD|1|A|C|1732
9PRD|1|A|C|1733
9PRD|1|A|C|1734
9PRD|1|A|A|1735
9PRD|1|A|A|1736
9PRD|1|A|A|1737
9PRD|1|A|U|1738
9PRD|1|A|A|1739
*
9PRD|1|A|U|1758
9PRD|1|A|U|1759
9PRD|1|A|G|1760
9PRD|1|A|A|1761
9PRD|1|A|A|1762
9PRD|1|A|A|1763
9PRD|1|A|C|1764
9PRD|1|A|C|1765
9PRD|1|A|U|1766
9PRD|1|A|G|1767
Current chains
- Chain A
- 16S mitochondrial rRNA
Nearby chains
- Chain 2
- 39S ribosomal protein L34, mitochondrial
- Chain 3
- 39S ribosomal protein L35, mitochondrial
- Chain 5
- 39S ribosomal protein L37, mitochondrial
- Chain 9
- 39S ribosomal protein L41, mitochondrial
- Chain F
- 39S ribosomal protein L4, mitochondrial
- Chain H
- 39S ribosomal protein L9, mitochondrial
- Chain M
- 39S ribosomal protein L15, mitochondrial
- Chain OX
- Mitochondrial inner membrane protein OXA1L
- Chain U
- 39S ribosomal protein L23, mitochondrial
- Chain V
- 39S ribosomal protein L24, mitochondrial
- Chain X
- 39S ribosomal protein L28, mitochondrial
- Chain Y
- 39S ribosomal protein L47, mitochondrial
- Chain i
- 39S ribosomal protein L51, mitochondrial
- Chain q
- Growth arrest and DNA damage-inducible proteins-interacting protein 1
Coloring options: